haloferax mediterraneii atcc 33500t Search Results


medium 1176  (ATCC)
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ATCC medium 1176
Medium 1176, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mediterranei  (ATCC)
96
ATCC mediterranei
The H. volcanii chromosomes of both hybrid cultures as well as the H. <t>mediterranei</t> chromosome of replicate 1 revealed segmental amplifications spanning one or multiple genes (indicated in grey; see supplementary methods). Furthermore, the ratio of copy number among plasmids and main chromosomes varied between the two hybrids. Note that two-fold copy number variation is expected along chromosomes and plasmids as cultures were collected during active DNA replication during log-phase growth . med, mediterranei; vol, volcanii.
Mediterranei, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ei a tc c  (ATCC)
96
ATCC ei a tc c
The H. volcanii chromosomes of both hybrid cultures as well as the H. <t>mediterranei</t> chromosome of replicate 1 revealed segmental amplifications spanning one or multiple genes (indicated in grey; see supplementary methods). Furthermore, the ratio of copy number among plasmids and main chromosomes varied between the two hybrids. Note that two-fold copy number variation is expected along chromosomes and plasmids as cultures were collected during active DNA replication during log-phase growth . med, mediterranei; vol, volcanii.
Ei A Tc C, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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haloferax mediterraneii atcc 33500t  (ATCC)
91
ATCC haloferax mediterraneii atcc 33500t
The H. volcanii chromosomes of both hybrid cultures as well as the H. <t>mediterranei</t> chromosome of replicate 1 revealed segmental amplifications spanning one or multiple genes (indicated in grey; see supplementary methods). Furthermore, the ratio of copy number among plasmids and main chromosomes varied between the two hybrids. Note that two-fold copy number variation is expected along chromosomes and plasmids as cultures were collected during active DNA replication during log-phase growth . med, mediterranei; vol, volcanii.
Haloferax Mediterraneii Atcc 33500t, supplied by ATCC, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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halorubrum genomes  (ATCC)
94
ATCC halorubrum genomes
List of genomes used in this study .
Halorubrum Genomes, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hispanica atcc 33960 wild type strain atcc  (ATCC)
95
ATCC hispanica atcc 33960 wild type strain atcc
List of genomes used in this study .
Hispanica Atcc 33960 Wild Type Strain Atcc, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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186ze07 cu467189 1 1 haloferax volcanii 1 haloferax volcanii k00421 1 haloferax mediterranei atcc 33500  (ATCC)
92
ATCC 186ze07 cu467189 1 1 haloferax volcanii 1 haloferax volcanii k00421 1 haloferax mediterranei atcc 33500
List of genomes used in this study .
186ze07 Cu467189 1 1 Haloferax Volcanii 1 Haloferax Volcanii K00421 1 Haloferax Mediterranei Atcc 33500, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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j7 2 haloferax mediterranei atcc 33500 natronobacterium gregoryi sp2 halovivax ruber xh 70 salinarchaeum sp  (ATCC)
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ATCC j7 2 haloferax mediterranei atcc 33500 natronobacterium gregoryi sp2 halovivax ruber xh 70 salinarchaeum sp
List of genomes used in this study .
J7 2 Haloferax Mediterranei Atcc 33500 Natronobacterium Gregoryi Sp2 Halovivax Ruber Xh 70 Salinarchaeum Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mediterranei atcc 33500t d11107 aj809514 haloferax sp  (ATCC)
94
ATCC mediterranei atcc 33500t d11107 aj809514 haloferax sp
List of genomes used in this study .
Mediterranei Atcc 33500t D11107 Aj809514 Haloferax Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nc 017943 plasmid phm300 arcog00153 1 g ugpb abc type trehalose transport system  (ATCC)
99
ATCC nc 017943 plasmid phm300 arcog00153 1 g ugpb abc type trehalose transport system
List of genomes used in this study .
Nc 017943 Plasmid Phm300 Arcog00153 1 G Ugpb Abc Type Trehalose Transport System, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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9 dhmea haloferax mediterranei atcc 33500 archaea moderate halophile iii standard n a n a n a dada alcanivorax dieselolei b5 bacteria ii standard  (ATCC)
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ATCC 9 dhmea haloferax mediterranei atcc 33500 archaea moderate halophile iii standard n a n a n a dada alcanivorax dieselolei b5 bacteria ii standard
List of genomes used in this study .
9 Dhmea Haloferax Mediterranei Atcc 33500 Archaea Moderate Halophile Iii Standard N A N A N A Dada Alcanivorax Dieselolei B5 Bacteria Ii Standard, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


The H. volcanii chromosomes of both hybrid cultures as well as the H. mediterranei chromosome of replicate 1 revealed segmental amplifications spanning one or multiple genes (indicated in grey; see supplementary methods). Furthermore, the ratio of copy number among plasmids and main chromosomes varied between the two hybrids. Note that two-fold copy number variation is expected along chromosomes and plasmids as cultures were collected during active DNA replication during log-phase growth . med, mediterranei; vol, volcanii.

Journal: bioRxiv

Article Title: Cis -regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids

doi: 10.1101/044362

Figure Lengend Snippet: The H. volcanii chromosomes of both hybrid cultures as well as the H. mediterranei chromosome of replicate 1 revealed segmental amplifications spanning one or multiple genes (indicated in grey; see supplementary methods). Furthermore, the ratio of copy number among plasmids and main chromosomes varied between the two hybrids. Note that two-fold copy number variation is expected along chromosomes and plasmids as cultures were collected during active DNA replication during log-phase growth . med, mediterranei; vol, volcanii.

Article Snippet: We obtained the genome assemblies and annotations for H. volcanii (strain DS2) and H. mediterranei (strain ATCC 33500) from NCBI RefSeq (accession numbers: GCF_000025685.1 and GCF_000337295.1, respectively).

Techniques:

Shown are the (A) ASE values comparing each species’ alleles across replicates; (B) ASE values comparing orthologs in each of the two biological replicates; and (C) as well as the inter-replicate correlation in ASE log-ratios. med, mediterranei; vol, volcanii.

Journal: bioRxiv

Article Title: Cis -regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids

doi: 10.1101/044362

Figure Lengend Snippet: Shown are the (A) ASE values comparing each species’ alleles across replicates; (B) ASE values comparing orthologs in each of the two biological replicates; and (C) as well as the inter-replicate correlation in ASE log-ratios. med, mediterranei; vol, volcanii.

Article Snippet: We obtained the genome assemblies and annotations for H. volcanii (strain DS2) and H. mediterranei (strain ATCC 33500) from NCBI RefSeq (accession numbers: GCF_000025685.1 and GCF_000337295.1, respectively).

Techniques:

(A) Approximately equal numbers of orthologs show significant allelic bias favoring either the H. mediterranei (453, red) or H. volcanii allele (476, blue). RPKMs plotted in this figure are the mean of the two biological replicates after normalization (see Methods). med, mediterranei; vol, volcanii. (B) Pairwise comparisons of adjacent genes within predicted operons show significantly more similar ASE than independently transcribed adjacent genes (Kruskal-Wallis rank sum test, p < 10 -15 in both cases). Op, adjacent genes within predicted operons; Non-Op, adjacent genes outside of predicted operons.

Journal: bioRxiv

Article Title: Cis -regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids

doi: 10.1101/044362

Figure Lengend Snippet: (A) Approximately equal numbers of orthologs show significant allelic bias favoring either the H. mediterranei (453, red) or H. volcanii allele (476, blue). RPKMs plotted in this figure are the mean of the two biological replicates after normalization (see Methods). med, mediterranei; vol, volcanii. (B) Pairwise comparisons of adjacent genes within predicted operons show significantly more similar ASE than independently transcribed adjacent genes (Kruskal-Wallis rank sum test, p < 10 -15 in both cases). Op, adjacent genes within predicted operons; Non-Op, adjacent genes outside of predicted operons.

Article Snippet: We obtained the genome assemblies and annotations for H. volcanii (strain DS2) and H. mediterranei (strain ATCC 33500) from NCBI RefSeq (accession numbers: GCF_000025685.1 and GCF_000337295.1, respectively).

Techniques:

(A) For a set of 19 genes, the expected number with ASE with higher expression from the H. mediterranei alleles is plotted. The kinase gene set had 15/19 genes favoring the H. mediterranei alleles (red arrow), in both biological replicates. (B) H. mediterranei grows robustly in 0.1 mM phosphate, whereas H. volcanii does not. See also Supplemental .

Journal: bioRxiv

Article Title: Cis -regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids

doi: 10.1101/044362

Figure Lengend Snippet: (A) For a set of 19 genes, the expected number with ASE with higher expression from the H. mediterranei alleles is plotted. The kinase gene set had 15/19 genes favoring the H. mediterranei alleles (red arrow), in both biological replicates. (B) H. mediterranei grows robustly in 0.1 mM phosphate, whereas H. volcanii does not. See also Supplemental .

Article Snippet: We obtained the genome assemblies and annotations for H. volcanii (strain DS2) and H. mediterranei (strain ATCC 33500) from NCBI RefSeq (accession numbers: GCF_000025685.1 and GCF_000337295.1, respectively).

Techniques: Expressing

List of genomes used in this study .

Journal: Frontiers in Microbiology

Article Title: Population and genomic analysis of the genus Halorubrum

doi: 10.3389/fmicb.2014.00140

Figure Lengend Snippet: List of genomes used in this study .

Article Snippet: Halorubrum lacusprofundi and the non- Halorubrum genomes ( Haloarcula marismortui ATCC 43049 and Har. hispanica ATCC 33960 as well as Haloferax volcanii DS2 and Hfx. mediterranei ATCC 33500) are completed projects.

Techniques: Sequencing, Isolation, Saline